The CellNetworks Deep Sequencing Core Facility is being established to provide access to Next Generation Sequencing technology for the Heidelberg University research community. It is supported by the Excellence Cluster CellNetworks, Heidelberg Molecular Life Sciences (HMLS) and the Heidelberg Center for Organismal Studies (COS Heidelberg).

Papers with acknowledgement of the Deep Sequencing Facility

[List of Papers]

People and techniques involved

The DeepSeqLab is run by David Ibberson, M. Sci., Claudia Loosli and Hannah Hänsisch, and is currently located in the BioQuant building, Im Neuenheimer Feld 267.

EMBL is our sequencing and knowledge partner.For sequencing instrumentation, please have a look at the EMBL Genomics Core Facilities GeneCore.

The facility houses a 10x Genomics Chromium and a Fluidign C1 for single cell analysis as well as a robust infrastructure for library preparation (Covaris, Bioanalyzer, Qubit).

Service

The service offered by the facility is outlined below:

We prepare sequencing libraries for

• RNA Seq

• ChIP Seq

• genomic DNA including exon capture

• methyl DNA Seq

We provide sequencing analyses in single-read or paired-end mode, sequencing length depends on instrument type.

Users will be supported by Bioinformaticians in the CellNetworks MathClinic in project planning, advice on bioinformatic data analysis and suitable software solutions.

Who has access to the service?

The following clientele can enroll as user of the facility:

• Members of Heidelberg University including the Medical Faculties Heidelberg and Mannheim

• Cluster of Excellence CellNetworks

• Graduate school HBIGS (Hartmut Hoffmann Berling International Graduate School of Molecular and Cellular Biology)

• HMLS (Heidelberg Molecular Life Sciences)

How to approach DeepSeqLab

Scientists interested in using the facility should contact us by mail deepseqlab [ aT ] bioquant.uni-heidelberg.de to make an appointment to discuss their project.

For sample registration, please use our Core Facility Management System iLab [sample registration].

Fees

Users have to pay for all consumables and EDV storage costs. A detailed pricing list can be obtained upon request.

Contact

Mail: deepseqlab [ aT ] bioquant.uni-heidelberg.de
Phone: +49 6221 54 51359

FAQs

Sample Submission

Allgemeine Nutzungsbedingungen

Terms of Use