Publications
2019
Gossmann TI, Shanmugasundram A, Börno S, Duvaux L, Lemair...
Curr Biol. 2019 May 7. pii: S0960-9822(19)30418-X. doi: 10.1016/j.cub.2019.04.020
2019
Romanov N, Kuhn M, Aebersold R, Ori A, Beck M, Bork P
Cell. 2019 Apr 19. pii: S0092-8674(19)30277-6. doi: 10.1016/j.cell.2019.03.015
2019
Wirbel J, Pyl PT, Kartal E, Zych K, Kashani A, Milanese A...
Nat Med. 2019 Apr;25(4):679-689. doi: 10.1038/s41591-019-0406-6
2019
Thomas AM, Manghi P, Asnicar F, Pasolli E, Armanini F, Zo...
Nat Med. 2019 Apr;25(4):667-678. doi: 10.1038/s41591-019-0405-7
2019
Letunic I, Bork P
Nucleic Acids Res. 2019 Apr 1. pii: gkz239. doi: 10.1093/nar/gkz239
2019
Milanese A, Mende DR, Paoli L, Salazar G, Ruscheweyh HJ, ...
Nat Commun. 2019 Mar 4;10(1):1014. doi: 10.1038/s41467-019-08844-4
2019
Schmidt TSB, Hayward MR, Coelho LP, Li SS, Costea PI, Voi...
Elife. 2019 Feb 12;8. pii: e42693. doi: 10.7554/eLife.42693
2019
Hildebrand F, Moitinho-Silva L, Blasche S, Jahn MT, Gossm...
Gut. 2019 Jan 18. pii: gutjnl-2018-317715. doi: 10.1136/gutjnl-2018-317715
2018
Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski ...
Nat Biotechnol. 2018 Dec 17. doi: 10.1038/nbt.4306
2018
Kayser K, Degenhardt F, Holzapfel S, Horpaopan S, Peters ...
Int J Cancer. 2018 Dec 1;143(11):2800-2813. doi: 10.1002/ijc.31725
2018
Huerta-Cepas J, Szklarczyk D, Heller D, Hernández-Plaza A...
Nucleic Acids Res. 2018 Nov 12. doi: 10.1093/nar/gky1085
2018
Mitchell AL, Attwood TK, Babbitt PC, Blum M, Bork P, Brid...
Nucleic Acids Res. 2018 Nov 6. doi: 10.1093/nar/gky1100
2018
Pedersen HK, Forslund SK, Gudmundsdottir V, Petersen AØ, ...
Nat Protoc. 2018 Dec;13(12):2781-2800. doi: 10.1038/s41596-018-0064-z
2018
Palleja A, Mikkelsen KH, Forslund SK, Kashani A, Allin KH...
Nat Microbiol. 2018 Nov;3(11):1255-1265. doi: 10.1038/s41564-018-0257-9
2018
Hennrich ML, Romanov N, Horn P, Jaeger S, Eckstein V, Ste...
Nat Commun. 2018 Oct 1;9(1):4004. doi: 10.1038/s41467-018-06353-4
2018
Ferretti P, Pasolli E, Tett A, Asnicar F, Gorfer V, Fedi ...
Cell Host Microbe. 2018 Jul 11;24(1):133-145.e5. doi: 10.1016/j.chom.2018.06.005
2018
Brochado AR, Telzerow A, Bobonis J, Banzhaf M, Mateus A, ...
Nature. 2018 Jul;559(7713):259-263. doi: 10.1038/s41586-018-0278-9
2018
Parca L, Beck M, Bork P, Ori A
Mol Syst Biol. 2018 Jul 2;14(7):e8131. doi: 10.15252/msb.20178131
2018
Becher I, Andrés-Pons A, Romanov N, Stein F, Schramm M, B...
Cell. 2018 May 31;173(6):1495-1507.e18. doi: 10.1016/j.cell.2018.03.053
2018
Coelho LP, Kultima JR, Costea PI, Fournier C, Pan Y, Czar...
Microbiome. 2018 Apr 19;6(1):72. doi: 10.1186/s40168-018-0450-3
2018
Rubio-Cosials A, Schulz EC, Lambertsen L, Smyshlyaev G, R...
Cell. 2018 Mar 22;173(1):208-220.e20. doi: 10.1016/j.cell.2018.02.032
2018
Tramontano M, Andrejev S, Pruteanu M, Klünemann M, Kuhn M...
Nat Microbiol. 2018 Apr;3(4):514-522. doi: 10.1038/s41564-018-0123-9
2018
Schmidt TSB, Raes J, Bork P
Cell. 2018 Mar 8;172(6):1198-1215. doi: 10.1016/j.cell.2018.02.044
2018
Korpela K, Costea P, Coelho LP, Kandels-Lewis S, Willemse...
Genome Res. 2018 Apr;28(4):561-568. doi: 10.1101/gr.233940.117
2018
Costea PI, Hildebrand F, Arumugam M, Bäckhed F, Blaser MJ...
Nat Microbiol. 2018 Jan;3(1):8-16. doi: 10.1038/s41564-017-0072-8
2017
Costea PI, Coelho LP, Sunagawa S, Munch R, Huerta-Cepas J...
Mol Syst Biol. 2017 Dec 14;13(12):960. doi: 10.15252/msb.20177589
2017
Minguez P, Bork P
Methods Mol Biol. 2017;1558:303-320. doi: 10.1007/978-1-4939-6783-4_14
2017
Kastritis PL, O'Reilly FJ, Bock T, Li Y, Rogon MZ, Buczak...
Mol Syst Biol. 2017 Jul 25;13(7):936. doi: 10.15252/msb.20167412
2017
Huerta-Cepas J, Forslund K, Pedro Coelho L, Szklarczyk D,...
Mol Biol Evol. 2017 Apr 29. doi: 10.1093/molbev/msx148
2017
Bedarf JR, Hildebrand F, Coelho L, Sunagawa S, Bahram M, ...
Genome Med. 2017 Apr 28;9(1):39. doi: 10.1186/s13073-017-0428-y
2017
Wang YY, Chen WH, Xiao PP, Xie WB, Luo Q, Bork P, Zhao XM
Sci Rep. 2017 Mar 15;7:44085. doi: 10.1038/srep44085
2016
Ori A, Iskar M, Buczak K, Kastritis P, Parca L, Andrés-Po...
Genome Biol. 2016 Mar 14;17:47. doi: 10.1186/s13059-016-0912-5
2012
Haemmerling S, Behnisch W, Doerks T, Korbel JO, Bork P, M...
Br J Haematol. 2012 Apr;157(2):180-7. doi: 10.1111/j.1365-2141.2012.09028.x
2011
Karsenti E, Acinas SG, Bork P, Bowler C, De Vargas C, Rae...
PLoS Biol. 2011 Oct;9(10):e1001177. doi: 10.1371/journal.pbio.1001177. Epub 2011 Oct 18.
2010
Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, Manichanh C...
Nature. 2010 Mar 4;464(7285):59-65
2009
Güell M, van Noort V, Yus E, Chen WH, Leigh-Bell J, Micha...
Science. 2009 Nov 27;326(5957):1268-1271. doi: 10.1126/science.1176951
2009
Yus E, Maier T, Michalodimitrakis K, van Noort V, Yamada ...
Science. 2009 Nov 27;326(5957):1263-1268. doi: 10.1126/science.1177263
2009
Kühner S, van Noort V, Betts MJ, Leo-Macias A, Batisse C,...
Science. 2009 Nov 27;326(5957):1235-40.
2009
Yamada T, Bork P
Nat Rev Mol Cell Biol. 2009 Nov;10(11):791-803
2009
Koscielny G, Le Texier V, Gopalakrishnan C, Kumanduri V, ...
Genomics. 2009 Mar;93(3):213-20
2009
Juncker AS, Jensen LJ, Pierleoni A, Bernsel A, Tress ML, ...
Genome Biol. 2009 Feb 2;10(2):206. doi: 10.1186/gb-2009-10-2-206
2009
Jensen LJ, Kuhn M, Stark M, Chaffron S, Creevey C, Muller...
Nucleic Acids Res. 2009 Jan;37(Database issue):D412-6. doi: 10.1093/nar/gkn760
2009
Singh AH, Doerks T, Letunic I, Raes J, Bork P
J Bacteriol. 2009 Jan;191(1):32-41
2009
Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, B...
Nucleic Acids Res. 2009 Jan;37(Database issue):D211-5. doi: 10.1093/nar/gkn785
2008
Korff S, Woerner SM, Yuan YP, Bork P, von Knebel Doeberit...
BMC Cancer. 2008 Nov 10;8:329. doi: 10.1186/1471-2407-8-329
2008
Jensen LJ, Bork P.
Science. 2008 Oct 3;322(5898):56-7.
2008
Miller ML, Jensen LJ, Diella F, Jørgensen C, Tinti M, Li ...
Sci Signal. 2008 Sep 2;1(35):ra2. doi: 10.1126/scisignal.1159433
2008
Miller ML, Jensen LJ, Diella F, Jørgensen C, Tinti M, Li ...
Sci Signal. 2008 Sep 2;1(35):ra2. doi: 10.1126/scisignal.1159433
2008
Harrington ED, Bork P
Bioinformatics. 2008 Sep 1;24(17):1959-1960. doi: 10.1093/bioinformatics/btn361
2008
Pallejà A, Harrington ED, Bork P
BMC Genomics. 2008 Jul 15;9:335. doi: 10.1186/1471-2164-9-335
2008
Pincus D, Letunic I, Bork P, Lim WA
Proc Natl Acad Sci U S A. 2008 Jul 15;105(28):9680-4
2008
Campillos M, Kuhn M, Gavin AC, Jensen LJ, Bork P.
Science. 2008 Jul 11;321(5886):263-6.
2008
Hooper SD, Raes J, Foerstner KU, Harrington ED, Dalevi D,...
PLoS One. 2008 Jul 9;3(7):e2607.
2008
Okuda S, Yamada T, Hamajima M, Itoh M, Katayama T, Bork P...
Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W423-6. doi: 10.1093/nar/gkn282
2008
Jensen LJ, de Lichtenberg U, Jensen TS, Brunak S, Bork P
Genome Biol. 2008;9(6):403
2008
Kunin V, Raes J, Harris JK, Spear JR, Walker JJ, Ivanova ...
Mol Syst Biol. 2008;4:198. doi: 10.1038/msb.2008.35
2008
Perotti C, Liu R, Parusel CT, Böcher N, Schultz J, Bork P...
Breast Cancer Res. 2008;10(6):R94. doi: 10.1186/bcr2193
2008
Quijano C, Tomancak P, Lopez-Marti J, Suyama M, Bork P, M...
Genome Biol. 2008;9(12):R176. doi: 10.1186/gb-2008-9-12-r176
2008
Harrington ED, Jensen LJ, Bork P
FEBS Lett. 2008 Apr 9;582(8):1251-1258. doi: 10.1016/j.febslet.2008.02.033
2008
Kuhn M, Campillos M, González P, Jensen LJ, Bork P
FEBS Lett. 2008 Apr 9;582(8):1283-1290. doi: 10.1016/j.febslet.2008.02.024
2008
Letunic I, Yamada T, Kanehisa M, Bork P
Trends Biochem Sci. 2008 Mar;33(3):101-103. doi: 10.1016/j.tibs.2008.01.001
2008
King N, Westbrook MJ, Young SL, Kuo A, Abedin M, Chapman ...
Nature. 2008 Feb 14;451(7180):783-788. doi: 10.1038/nature06617
2008
Scholtes C, Diaz O, Icard V, Kaul A, Bartenschlager R, Lo...
J Hepatol. 2008 Feb;48(2):192-9
2008
Günther S, Kuhn M, Dunkel M, Campillos M, Senger C, Petsa...
Nucleic Acids Res. 2008 Jan;36(Database issue):D919-22. doi: 10.1093/nar/gkm862
2008
Haudry Y, Berube H, Letunic I, Weeber PD, Gagneur J, Gira...
Nucleic Acids Res. 2008 Jan;36(Database issue):D847-53
2008
Jensen LJ, Julien P, Kuhn M, von Mering C, Muller J, Doer...
Nucleic Acids Res. 2008 Jan;36(Database issue):D250-4
2008
Linding R, Jensen LJ, Pasculescu A, Olhovsky M, Colwill K...
Nucleic Acids Res. 2008 Jan;36(Database issue):D695-9. doi: 10.1093/nar/gkm902
2008
Foerstner KU, Doerks T, Creevey CJ, Doerks A, Bork P.
PLoS One. 2008;3(10):e3515
2008
Foerstner KU, Doerks T, Muller J, Raes J, Bork P.
PLoS One. 2008;3(12):e3976.